PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00024629-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family TCP
Protein Properties Length: 383aa    MW: 42825.3 Da    PI: 9.2197
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00024629-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP81.52.1e-25586366
               TCP  3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................s 66
                      +k+++++++hTkv+gR+ Rv ++  +aa +F L +  G+++d++ti+WLl++ kpai e+tgt                  +
  PSME_00024629-RA  5 VKRSSTKDRHTKVNGRGQRVKIPTATAAWIFHLMRGFGHKSDGETIQWLLNKVKPAIMEATGTcvvptlplpivgsgtstvP 86
                      6999***********************************************************7777777776665543220 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.7E-19969IPR005333Transcription factor, TCP
PROSITE profilePS5136919.3211064IPR017887Transcription factor TCP subgroup
SuperFamilySSF475761.07E-5334376IPR001715Calponin homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MRLVVKRSST KDRHTKVNGR GQRVKIPTAT AAWIFHLMRG FGHKSDGETI QWLLNKVKPA  60
IMEATGTCVV PTLPLPIVGS GTSTVPALPM SILGSGTGHV SSNPSKLQQH PQAPPSAHGV  120
LLKALTEDVA YVEWVLIQVV KCTWNLCKRD MATFDIGSCS HKYDRAEIDM RAPFESVKDV  180
VSLFAERVVG DKITEKRPRI PEEKAHQLRN GMYVFGWLEQ YKDKQPTMSS TAVSYTGGDI  240
KNFGDMKYLG KNSPNVDNWF SSSAEKGTGL GGGWKLAWQW QKSDESNMSG WLFILKEEGS  300
PLSLCFVNPC AISRNKYAFL KNATTTLLHT IGEFEKVAFV THINSYIIDD PVMKRYLPID  360
PMTNYLSDIM KDGILLWYEY SIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.19e-25TCP family protein